I wanted to play Ace Attorney, while takimg constant sreenshots for ripping purposes, but I noticed that the colors are slightly off - is there a way to configure the emulator to get them to be displayed correctly?

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On DeSmuME? I've never run into that problem. Is there any chance that you could show a picture of the weird palette? I might be able to help if I get a better understanding of what's going on.

Perhaps you're using an older version? I suggest downloading the latest development build from here http://buildbot.orphis.net/desmume/ and tinkering with the graphic settings a bit to see if that fixes anything