Cloaked bird lady being Jill. Saw it coming from a mile away

Maya's back

Master Chief ISN'T dead.

Snake doesn't commit suicide

Sucked.

The bell's gonna ring! (There's a bell in your village as a warning for attacks, and when you examine it your character says "I hope this bell never rings!")

Lieutenant Miller's on your side

Miller isn't on your side

Miller is on your side

That blond professor was one of the Team Dim Sun.
The three guardians are Lucario, Heatran and Cresselia (if this one counts as a spoiler)

Was short.

Are rarely made by American developers.

Kain was going to turn evil. All rivals has to do that.

Palom, Porom, Rydia, Edward, Cid and Yang didn't really die - Tellah did though.

The King of Baron was someone else in disguise... Namely Cagnazzo.

Edgeworth is still alive.

Saddler was small-time.

Joshua's still alive. I had no idea that he would be the Composer though.

probably been said but "slender young man" aka Naoto is a girl the only shocking part is that no one realised sooner -_-

Adrian didn't do it.

The miracle happen.

Ronnie really was Masque*de*Mask.

Beat wasn't really bad.

Joshua was too cool to be normal. He had to be in the higher-ups too, as he was using his phone.

Joshua's gay :D

Yomi was evil.

Something was wrong with that church.

Barlowe's true goal was to resurrect Dracula. This was obvious when you got the Bad End.

Iris and Grace were sisters. Mila could talk.

Kratos is Lloyd's father. If you didn't see this coming you're really dense

You have to find the triforce and the bad guy is really Ganon

Your manager is evil

Snake is in the box

GLaDOS is evil

Ravenholm is full of zombies

All this terrible stuff happening to the sea is the work of man and industrialization.

You Win

Ikutsuki was evil.

Quite a few...
The Boss had never defected
Eva wasn't who she said she was
Naked Snake was Big Boss
The Sorrow was The Boss' lover

Richard Grey was "The Master."

Robotnik backstabs you.

The image on the wall at the end of Lost World? Yeeeeaaaaah, that's what Chaos is gonna become.

BLAKE IS EVUL!!!111!!!

ganondorf kidnaps zelda

zelda is Sheik (damn you brawl!)

Diego is Godot

Rhyme is a boy...
WTF? SHE'S A GIRL!?

The impossible level is possible

The leader of the doomsday cult is Takaya.

SAWHIT DIDIT!!

When you find out Al Mualim is himself a member of the Knights Templar, and used Altaïr to kill the other members so he could keep the treasure for himself.

Olga didn't do it.

I expected another witness to appear, but not Kristoph.

You lose the game many times before you win the game.

You lose The Game

"You're... NOT ME!!!"

Need I say more?

Micaiah is the true apostle

Bellboy = De Killer = Butler

Phoenix, COME ON! D:

...

I was a bit surprised how he couldn't have noticed that sooner.

...or whatever the name is xD
Well, everything, just that black guy's real name was something "shocking" (didn't know he had a false name), but nothing more.

Naoto is a girl

You killed my brother!
Yeah...see...that was my..uh...evil twin
Ok I believe you now.

Lord Brigan. He is evil. You will fight him.

Kefka was the real villain the entire time. The emperor should have killed him off after raising the Floating Continent.

Gestahl was lying when he said he wanted peace.

Flora was actually Don Paolo in disguise.
Anton wasn't really evil.

It was really "Heath" (not Keith) sending you those SO-TOTALLY-CONVINCING voice mails on your Styler. Supposed to be obvious, of course.